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The "installation" is not the SC but the "publication" of your system. Erase your application and make a new publication. This is because their old applications have different names of the new, have not been subscribed!
Why not write a little helper script to clear the tmp directory. Should be pretty simple since the tmp folder is relative to your SC install folder. SC 7.1 allows you to add buttons to your menu. You could link to the php file you create and clear the tmp right from the SC menu.